NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1687

Scaffold Ga0153698_1687


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1687 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)13260
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000346Metagenome / Metatranscriptome1253Y
F001817Metagenome / Metatranscriptome630Y
F001827Metagenome / Metatranscriptome629Y
F008879Metagenome / Metatranscriptome326Y
F042750Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0153698_168711F001827GGAMNHDVKTMADGAAVVMGLGGFLGWMTPVVALIGGVLTIVWMVIRIWETDTVQRWAYKDAVNK*
Ga0153698_168714F042750AGGAGGVIKGHTDDCAVTQDGPCTCGTDEVLEELALEDAGLTAEDFE*
Ga0153698_168718F000346AGGAGMDKKDLAQDKKMVAGAVHKHEKKMHPGKPMTKLKAGGKTNGDMLKYGRNMAKVMNQRGS*
Ga0153698_168723F008879AGGMATTFKKGDVVKAVAVIPQGPVLALRMSEEGVFSYLIEWTDTDGATQQRWFEESQLTGA*
Ga0153698_16879F001817AGGAGMTMQTDVKSAHRSTAGSYLAERTRLKGFVVTPAISTACTFEIRNGSASGAVLFTMDITSQTVANSTYVLVPGEGILASAGLYLTLSVGSLTSLSVFYG*
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