Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1615 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1615 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14264
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (42.31%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14264

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (42.31%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026860	Metagenome	196	Y
F042341	Metagenome / Metatranscriptome	158	N
F074557	Metagenome / Metatranscriptome	119	Y
F097349	Metagenome / Metatranscriptome	104	Y
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_161512	F101160	N/A	MTTPYNSHSSAISAMNNLIDKFVPLREAALQEHYMKADETRALLKAMGCWPKPTGRPAEPRGKKPKNGKTASEKGREAYEWARKNNATYTEAAERFCISADSIHSYRQYRKLPKLKNK*
Ga0153698_161515	F074557	AGG	MSLVLALSAALLASEAVPEAVVQAVEQVESSGRGSKTPDGDAGKAIGCLQWHSSAWKDCSAIRLKAGLAVYPYADAKAPIRAREYARTWLTVLKVRLTTQLGRQPFPGEIWLAWNLGWTGFQRYGFSWAYVSRVKFEKARQVNTLAWGLPKRPAVSR*
Ga0153698_161516	F026860	GGAG	MSKPSDIIARLMRELTASAEDTPPPAGFFTVDDIRVELRMAHTRNASSRAYDLFRRGLLERKAHQFKAKTGQCHKAYVYKPVPPYRSIREASEGLFAHQADKVPKGWVRIVDYCFDVRISDVALRGRITRANLKPKYYKTPRGIIGLHQNAYYWKPDLDRLFAKR*
Ga0153698_161526	F042341	N/A	PRPKSDPPAVQYGEPHFTFRVLGRVKPTHDPKCPTPFGYCWKGFGDIHVDPRQSEEEMIDTVAHELLHDALPYLDEEAVEKAANRIASAMWKLGYRRTVIQ*
Ga0153698_16155	F097349	N/A	MKPKNIDDSGRLEACKELILKHRATAGAKASYELYGILFGRKMEVDRVDHAPTSGDFAPLIGKKRIASLFTAYDMVVEFRGAWAKTEAEAKVVAWEAGDNA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1615

Overview

Ecosystem & Geography

Associated Families

Sequences