Scaffold Ga0153698_1598

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1598
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14449
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001150	Metagenome	764	N
F001279	Metagenome	732	Y
F002644	Metagenome / Metatranscriptome	540	Y
F011486	Metagenome	290	Y
F014973	Metagenome / Metatranscriptome	258	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_159813	F001279	AGG	MPATTTIEIVGVKEAINSLRKIDPQLQKDFKSDATAIAQPAIQAGKAVYTDLPLSGMKYNWTQRDRKLFPFTVTKAVNGVRMRFDTRRGAVGVILIEQKDPAAAIFETAGRANANKLGQALGFVGVGRTRLIGPAVYKARRGIEGEMTKMIAKTMREVQREI*
Ga0153698_159814	F014973	AGGA	MKLKLKVDLNNGSAPIEMTTNMFVICEWERTENRKISDGKGIGYTDLVCWAFHLLKLNGETLPPNYRDWVKQNPNMTIEAIDETNPNPTA*
Ga0153698_15984	F001150	N/A	VLTKHEKSRIAVAIAESQASANAKWTPEQQAKVDAAIVKMARMKPRFTADEVWYELGASFPVTKGMTARLMVAERRGVIKNTGEITYAKRGGQHDHAQRLTIWQSL*
Ga0153698_15985	F002644	N/A	MRYCISPTNERLKMTENIDPRTDPQFKALMQVMNDITQNKVPFYEPHELAARSTLRALQHQIDDHNVLDDSDLIDTLNQARIEIKYLCSIITDLHERLKQRDIELGIKQLRLNENEVEIQRLENMVHRAY*
Ga0153698_15987	F011486	GGA	MTKPYVITAQPVVKAPLAGMAKWVELAVKHSDGSLFNNGIWVVRDVRHKPGVISNHARGLATDLSYRWLAQKQLGRQDGRKQSLAYIVKLLEHADTLGIQLVIDYALKRSWKCDRGTWQPLPSVDDGDWYHIEVEPRLAHDVKATKQAFQAVFGVSPKAAPQSV*