Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1591 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1591 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14580
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (81.82%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14580

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (81.82%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011830	Metagenome / Metatranscriptome	286	Y
F015091	Metagenome	257	Y
F029433	Metagenome	188	Y
F038591	Metagenome	165	Y
F084230	Metagenome	112	Y
F092026	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_159110	F038591	AGAAG	MSAKVDISVVGVKDTINQLRKLDPELQKQFKADATAIAQPALNAAKAVYTQVPLSGMSRDWKQKKDGRKIKGFDVAKAKSGVQMKFDTRRNAVGVILIIQKDQAAAIFETAGRKNTNSLSRNLDPVSAGRTRLIGPAVYRSRRGIEAAMKSTIAAAARTVERGI*
Ga0153698_159114	F084230	GAG	MATYWAELDTNNVVTQVITGVDETTIEGIPTGDWYSNFTGVPCVQTYMDNPDKVYAGIGYTYDEATQDFTAPIQPEPEPVE*
Ga0153698_159121	F015091	GAG	MSDLEQLEQILKAFVIVTAIADFIGKDDVEQHLRWAAKNYAERIYKQSI*
Ga0153698_15914	F011830	AGGCGG	MTTYNTYSKQLISNYACIATLEPTEIVVGQSITVAALGSPFNGTFTVLDLPQHEFTGIDSTTGEWLFDVNVARPNQILYACTGSNVEYVIALAGTVAYTQVCSWITAAQILTWLGIATATADDTTFVTQCASAANAFCYRRRQEVGYFDSLTTSPSGDVTLATIMYGGALYRQRGGISDFASFDGMSAGSTNGLSPIVKQLLGVDRPQVA*
Ga0153698_15916	F029433	GAG	MTDYLVTSNRLNGHSRGDIIKAADLGDLTTDILFLIESGHLSPLKATKSAKPITTEQQE*
Ga0153698_15918	F092026	GAGG	MKVKLSVDLHNGTPPIELTTNMYVVCEWEKLENRKVSDGKGIGYSDLCCWAYLILQVRGDSLPASWRQWVKANPDMEVAAIDETNPNPTALAVTEGN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1591

Overview

Ecosystem & Geography

Associated Families

Sequences