Scaffold Ga0153698_1567

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1567
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15067
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (35.71%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F016253	Metagenome / Metatranscriptome	248	Y
F031459	Metagenome / Metatranscriptome	182	N
F039136	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_156720	F010835	AGGA	MNAVALRTERALVDWLAAQDWSASPLGTPTCLTSYGHGAFADQDLEDKMPDFPRIVVRSSTAVPVHPSERTCEVDVTATLQLSADDTAEYQVLAIIQIFENLLQYLYVDGNIAELNADDTNPSGGYNAQFAVPVDFGINDISERARTFSRSMTIFAAANSI*
Ga0153698_156721	F013879	N/A	MNPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALISLANQYGLPQENVSMHRGSSAYSYNAKAGFNPSSSVRMNIGLSDNQIGTVEAIYSKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT*
Ga0153698_156722	F007260	GAG	MGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARILVKLADWRLADSTLVTVDAAVWSCDVGANVDRLLQESGSLLLQENTDRLLLTFGKMLPVVGRLITYDGRQMRIMSAKRDGSGAYYALELGSKTK*
Ga0153698_156726	F031459	N/A	MQTDTNSSSGVGISLATAAAAGAVSFIPQLTQWFQLGAAILAFIAASIGLYKTFKK*
Ga0153698_156727	F001272	N/A	MEISIKLTQEQVSHLLQLIDIAVKAGGIQNAKVALPLVDIIVEASQPKSE*
Ga0153698_15673	F016253	AGGAG	MKDSIKKIIDGGTGVYSISKQEAGEIHKAAKKVKNYEISYWTRNRKRKESK*
Ga0153698_15676	F039136	N/A	MTIEIKYTASVYTPAGWRGVTIKATATKTSEKMALVVEVLEIDGESPKSNMSRTGASRQRFNGNSISCREVGAKKRLSACEIVN*
Ga0153698_15678	F013412	GAG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKSYAQRVTFRSFDSEDMEAVNLLIEGTHVMFDGDCDAVADKSSTGWWYANPRVTGRISEIIPSGHAS*