Scaffold Ga0153698_1511

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1511
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16161
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F006018	Metagenome / Metatranscriptome	383	Y
F010913	Metagenome / Metatranscriptome	297	N
F020529	Metagenome / Metatranscriptome	223	Y
F028095	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_151111	F020529	N/A	MEEKPMFSNKNIVKYCIKYFVVLTLASYGWSEASSLASQKSDVANLIGTALFAGLFIGLLLILKSDGTKLVNAITENKNKENE*
Ga0153698_151115	F010913	N/A	MNALKKFFKAVFCNNDNNECYDPILLKAVLDSNKQQIERLNEIMSAINNLQDALARLSSATDSAVTVLNTPHPSEEAIQAAADLVNAQAARLEAASDSDPTTIA*
Ga0153698_151122	F028095	N/A	MSEQTYMKLEDKVNRPKLSRENINRENKRFKRVVDQYQKWCTDVGGYETRETYEQDIIDCLFESDTDGYALATLLKEKCYIEPDSELVDILDWVSIIKDSLTKEIIGKWTNENFLEIPSDVIGKKVNAKQGYKKYENHYITTIRPDTYEVTVSDDINKKGGWVIRYEDITLL*
Ga0153698_151123	F000962	GGA	MNVHVPDELKVKYPHMEFRGKQRQLNNRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLTKVS*
Ga0153698_15118	F006018	N/A	MKKYRIKTNDIGMCMSVRCDFYQTCTNNSVNMFYKTQHKFEPVLDECICLSYSSGKNTTDYPDNCYPKLLKKIYVN*