Scaffold Ga0153698_1504

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1504
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16179
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002269	Metagenome / Metatranscriptome	576	Y
F004430	Metagenome / Metatranscriptome	438	Y
F033040	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_150410	F033040	AGG	MEVQAWVAVIVGVMAILSGLYAAVRFIVSAMLHEIGPQANGESLKSQVNRLEARLDHIYTILLER*
Ga0153698_150411	F002269	AGGAG	MNEKVKAAALSYFRAAAASVAAIYMSGITDPKVLANAFLAGLIGPVLKALDPKDSSIGLGSK*
Ga0153698_150413	F004430	GGAGG	MARGNQVLMMLIPNGGWIISGDEYDGITFLECEPITKAEFEAGFAQYDAWKAEQDSKAATDKAALLAKLGITADEAKLLLS*