Scaffold Ga0153698_1499

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1499
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16230
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (23.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F014605	Metagenome / Metatranscriptome	261	N
F048316	Metagenome / Metatranscriptome	148	Y
F055561	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_149912	F048316	AGG	MKRFFSWAKGFLSENGEASSKRLVGVISAITLSYTLIRNQNEPLIYSVAALSAAALGITAAEKIFKKPTNENKS*
Ga0153698_149916	F001775	N/A	MKELLDDERIRIAVLAFMAGVILAFIVFPKRELETVYKTKTERLTDTLYITSSDTVYVSKTKIKTEVLRDTVLIDFKPKISAFTASFPFEHGSTSVSGEVLGEVLKMTAINDYKLPVVTNTIIETKTETIIKKSKGFYLGANVNSVLNLGASASYVDDKYLFSYQFQPVTKTHTLGVSRKLF*
Ga0153698_149920	F008081	N/A	MHEDQILNPFGFGNATKVIDENRKPPEYWQEIFSLHQVSAENEFYVLFSDGLLVKKGRSKFTTSQYIKGEKFISFQKVYARV*
Ga0153698_14993	F055561	GGAG	MPDSFYFMSFAEYQSIAYGHQMRESKQENLFRSIWVQLNNVNVTKKSDLIRKPEKFWKIPLLDAKPVHIPTQAEKQKAYEIGLTWQNLKFEEEAIFDTITKTIQ*
Ga0153698_14999	F014605	N/A	MIVNLAIALTDIEGNKITNENGEFMYLSKMVGNALFAAEEKEDPIRLYELAKKVYYSEGDMEISKSDADLIKDKVKAKGFTVLVLGPLYEALKEK*