Scaffold Ga0153698_1496

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1496
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16259
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N
F055432	Metagenome	138	N
F056339	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_149612	F045551	GAGG	MTEQRELEILRPYVAACGELVSSNYKLEEHLKKIDRLLLEVLMGDIDPMQAMINRQKIKDEYAQP*
Ga0153698_149614	F031377	GGAG	MITNANECISVNRTNQRLTPFNTGKVQIGLLYQSPPPEMTASEELVQAALLGVGSIHSEPPLWPVVLGSALLAILLITLIG*
Ga0153698_149615	F039000	AGGA	MTKKTDATDKDIGQIMDDAQVLLNFCSNTFAKPSDAWFACLVSSAILTAELSVPLEKFLEGFEHAYNDAMKAKKDMGASYDH*
Ga0153698_149623	F055432	AGGAG	MKNLSFDDVAFLDVYQHAVAVASRADVVRFLSADPDERCSREFCDSMDDVYSSIADAHEVWFCALKHARTNKGMTVGKLSAALANLPRDLPVLIWDAGTRLGVAHIDDSFIEDEYPRLELNTDRDD*
Ga0153698_149624	F056339	AGGA	MPIYKYDVCFPNSQSVVRTFPSLVRARDFMRVMSADDLPFLVMPWDENSMPLIVRRVKTPRKYHTKTAVKVDILGPSQQKG*