Scaffold Ga0153698_1495

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1495
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16282
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013887	Metagenome / Metatranscriptome	267	Y
F016660	Metagenome	245	Y
F028151	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_149514	F013887	AGG	MDYLVAAIKKLKPNAQFTFTNNDYSTIKWDVLEGEAPTQLEIDDAIKQVKAQEKSETSAKEKAKAAAQAKLAALGLTVEDLTALGL*
Ga0153698_14953	F016660	N/A	MPEGFKAYQCMDCGCVGVKNIAEALSIPDSDIARCDKCGGWKFIAVVCHTCQLIESK*
Ga0153698_14957	F028151	N/A	MNPIEDLKNFGYVFMYSIVAITLVAWVIHEIKDTAFQNGYWKGRAEGWQSHRRLINTKIKSDEVFDYDKN*