Scaffold Ga0153698_1479

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1479
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16596
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002934	Metagenome / Metatranscriptome	519	Y
F004050	Metagenome / Metatranscriptome	455	Y
F007223	Metagenome	355	Y
F020007	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_147916	F002934	AGGTGG	MNMKHPAVISVGAFLAVWGTTSNFALDYRAILGSIVAGVFGYASPKK*
Ga0153698_147918	F004050	GAG	MARKKVIDLDTYSRLDAWAISLHEMYRALRRAGFAVDIALSIIQDRDAYPEWILPEIPNRVDRLPYEDDDED*
Ga0153698_147921	F007223	AGG	MFDPSLGDLIAMIALSALYFHLGRTVGIRVGYLKGRKAVRDYYDKKERVRV*
Ga0153698_147926	F020007	AGGA	MNLTRMVRSVARAHQGLNPGPKGTARGVAIAIGISLSIAMPLDAKASNQAIRYVKDLAQYQLTDKQESCHHEIVYRESRWILRAVGNKSGTKQTHGLYQIKSESMRNASAVKQFWTYWHYVAHRYGWTEYDEPDYCKALHHLKTKGWQ*