NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1462

Scaffold Ga0153698_1462


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1462 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)16954
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (22.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F024047Metagenome / Metatranscriptome207N
F078623Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0153698_146214F007859GAGMKNLLIIVLLCTGCASGMYLRYSYNRALENLPDCSKVHAINNQYITYSMIEPSTNTVYKIYTNYYRAYYNCDGKIINTTKN*
Ga0153698_146215F008688N/AMNHFNKIIVGGLAAILLTAMTVEPPKLKVYLIMSYRGNDLAIEKVYLKKENAEKYRDMYKDSHNYSVEERELTE*
Ga0153698_146216F013524N/AMKTNKEVISRLREFTSNNCNVSIDAKLCEDIRYLCDEVERFSKEIVKANNHMDEDHIIIQRYKNKLSKYESF*
Ga0153698_146217F009135N/AMSKPKYYLKVNLPANFDDLDAEVIKKDLITYINSRNQYGALYGPKSSKKGITVDKIIYSANED*
Ga0153698_146220F024047GGAMANVNTKDIIDWVKNAVEKKMIKELNIPNAKVYLSCDRPHPDVILETKNEYGDLQIVRFLII*
Ga0153698_14628F078623N/AMKDTIIIHNIHDKASREFVAVYGNRNDVTVLEDDGLNVRLAFPYISAFPTVVIPTPSYENTDENGVVTKIEGSIEYLRAPEDWNTVQTRIDYWENKVPNWKQTDSRYKQ*
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