Scaffold Ga0153698_1449

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1449
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17261
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F011919	Metagenome	285	N
F013988	Metagenome	266	Y
F021105	Metagenome	220	Y
F023058	Metagenome	211	N
F041766	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_144912	F013988	AGGAG	MASYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITGVDATFNGTFVVYALPQYAFMGVDDEGDLLFDPAVSIPNQVLYAKTASDVARTASSGTLTITQVCTWVTAANVEDWLGIGTATAGDAAFLTVCAAAASQFAWRRRMEAGYVDSLTTVPSQDVFLGTQMLGGSYYRQRGSIDQFSSFQNMGTVPVMGLNGMVRQLLGIDRPQVA*
Ga0153698_144918	F023058	N/A	MAGVAVIGSGNYDLEIDTGYMWDGFTLDDELKGELNNTEYVLDGVSQYASVMDGTIALTAKRGRANTGDQFAYGTMSFTLNDTYADGVFNPFDTTSPYYDPANNQPGLAPLRQVRFSRYDSLNVKKFLWVGYIVNYDYTFTLGGLDTVTVNCADFSYQLGQTFLAEWNVTEELSSVRFDALLDLPEVAYTGTRSIETGVATLGGAAAWTVANGTSVAAYANKINEAEQGRIFVDREGTMTFQKRIGTTLGVPVADFHDDGTQIGYSAIDISFQADTVVNRASIQHAGATSPQVAEDLVSQAAYLVQTQSITDSLLHNDAAALTLAEYLISPDPEARFNFLGTEFPGLSTADQETLALLDVGDLINIQKSITTSAGPTQFAQDLTIEGLEHRLTLSAGHAVTYFTSPTTIVYELILDDLVYGTLDEDNVLG*
Ga0153698_144923	F041766	N/A	MVEVPTIGVKNMTEPKVFIYEVGRCNLDNGQEILVQIFRHEDTHKIIRAQIAFRTLAGDSWGVPTELSFQQ*
Ga0153698_144925	F000722	GGA	LEPSEVTEEPYPETGITEETQQMYPENYSDKYNKVFKEFIDDIMRPNHVARPIDRMDDHEILLDELTIMYDAHMTIGGEQTRFNASVIRAAINCIRAYSA*
Ga0153698_144926	F011919	AGG	MNDLQLFAPTRGLGAYREECAIDRNTVIISPSAKPTSASAALNALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLQRPTLAGNMAIVWKAR*
Ga0153698_144928	F021105	AGGA	MRNPNEEYDRLHDHMTAIARERDNSNRIIKTLEERIKELEDELVLAHEALARRYTRP*
Ga0153698_14494	F000722	GGA	LEPSEVTEESYPETGITQETRNMYPENYSDKYNKVFKEFVDDIMKPPRPIDRLEDHSILLDELTLMYDAHMTIGGEQNRFNASVIRAAINVIMTCTK*
Ga0153698_14495	F011919	N/A	MQESETDQMNDLQLFAPTRGLGQYREECAIDRNTVIISPSAKPTSALAALRALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATDLERPTISGNMAIVWRAR*