Scaffold Ga0153698_1441

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1441
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17551
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F017130	Metagenome / Metatranscriptome	242	Y
F020906	Metagenome	221	Y
F030434	Metagenome	185	N
F090388	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_144124	F020906	AGGA	MPTSAQVSVAATATVIVAASNFDQTVNLHNLGGGAIYLGGANVTTANGYKFDNGDKLTVTVGDHEELYGITASGTQTIAVLSQIN*
Ga0153698_144126	F003067	N/A	MTAAQSLIAIAIGLCTLMGFAAGLVRHLVKYYLSELRIDNNGGHNLRGRVDRIEAKVDSIYEMLLQR*
Ga0153698_144130	F030434	N/A	MAITEMAQIVQVILDRSQELQAAASGFARSTGDKANTPDHAGRYNTKINFHEFIAEHSEAAGAEIAVAQYMGIRNFIPTVNTFHNAPDIQLGNLGFEVKWTKYINGHLIIHKDYPRLSDVAIMVVNRSPVYQIVGWMPVLWAKKAKYYNAVDGNFWVSQRELFEMDALRKSVYGITED*
Ga0153698_144131	F090388	GAGG	MALLRINCRVCAKIGQGMQTHKIVDEFINLPPNVVCVQCLGCGVMGIEMLLDTERARDEDIDA*
Ga0153698_14415	F017130	AGAAGG	MGYAEIHTPEGWINVEDIPMVDTVNCQLCNEPTEAWNIVANIVIKDNVVSVGTWQCNKCKAVNG*