Scaffold Ga0153698_1436

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1436
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17713
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007911	Metagenome / Metatranscriptome	342	N
F044969	Metagenome	153	N
F057981	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_143611	F007911	AGGAG	MAAVTMLDRLIEAAFQELLTATVTGVTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTLDAHTRKCSKVLQAFYDSSPLATRLNATTAIGSARCYNAKVDSIEPEADDEERTMRRTYKLAVIAQPNSIAS*
Ga0153698_143614	F057981	N/A	MSEEALLQELDNSLISPDRFFKDQRLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKTIRLAWDKDAFREKLLEWIAEMSEDDRNTASVMCSSILAEANKARVNVIPSAIAAPPGNA*
Ga0153698_143616	F044969	AGG	MSASLTVDASKLQKAMKAFIGNTKAGAAKEMRIQARMLCVSLANSTQPFGLGNDVKKVGEKAVTRDIDRVYKSAGSASKDIAKLSLPNGKTKTQNAEQMAKALAALVLGKTGGSKRRRTESAQQLLNRIRQQPYVGTQVGPFDNGKSHQAARYGKSKRVPKNQFVRQIVTKDTPLSRYYRDKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVSDKSQTALGTFSKPYVQMTNTIPWINNVISSGTIQKSIDIQVLKMIKRLSIIANYESKKAGL*