Scaffold Ga0153698_1429

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1429
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17973
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008619	Metagenome	330	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y
F043944	Metagenome	155	Y
F054875	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_142911	F043944	N/A	MIFNGHTLETIEELDDVTLANIQTMYADGMIGNYGVLTQLATLTNGVFNYMRTANSPPYKLANILGSAYDYIYPPLSADKQKAAVNDSLLAFMQQAQGFDKTLFGVKDG*
Ga0153698_142912	F054875	AGGA	MTKLSSAFGEKYQAKRKDLLTRSFVLNGHTFKVRIPLVIESDAIYKKVANPDEETIEKIYQEITAPLRQFESNQNEDFEFTDTDILVEKRSMREAAKNKAITEARITEFFKLLVPEMEGVTLEDLTYADIEEEFPIAVQMLIVEKIGEVISPTYREARGN*
Ga0153698_14294	F024113	N/A	LVWNQKTYWNLTFTNSATNLPVNLTGATLDAQIVRRELSNIIDTRNGLTFDIADYNPAPAAIPLTITNIVAAAGSCTLVIDASAWSLMSTDPELEINAADPVGYSGRVKVSFPVSGSTPADDSIIFLLFLVRSDGVIVL*
Ga0153698_14297	F023109	N/A	MIRPATRYDIPRLLEIVEAYAYENPIKKLGESHNHFPRYVEELLFSIIQGRGFIYIDSHLRGAIVAYKSSNIWSPKVKELNELLWWVEPEHRNGTIGGRLWKAFDERAKEMLKAGDVDFVCTSISANGPLIDYTRRGYKALGATFVRE*
Ga0153698_14299	F008619	AGG	MSFQTIFDIQQSMTVNNRRMVGQQVARSGYITVAQYLTAVPWVFTIQPHAYLYYPQVRDVIQSIDNKDRQLPETITFNSTNLSWFTEMRGTATAATLNGAPAANTQTLALISNGTFKAGDFIMINGYTYKITADSAGSSVGINRPLIGSPASGTTVSIGNACTFTVVAESCPTYTLNPMTDGAFVQWDAPFVFREYIT*