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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011335 Open in IMG/M |
| Scaffold ID | Ga0153698_1406 Open in IMG/M |
| Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18302 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (72.09%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Hwacheon, Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 38.0874861 | Long. (o) | 127.761456 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000332 | Metagenome / Metatranscriptome | 1283 | Y |
| F001538 | Metagenome / Metatranscriptome | 674 | Y |
| F002707 | Metagenome | 535 | Y |
| F017789 | Metagenome | 238 | Y |
| F054866 | Metagenome | 139 | Y |
| F073255 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153698_140610 | F054866 | AGGTGG | MSKYTITHGSIASVQYVTLPDGDKVIVTDARDGSEIELPKLPIKVQAFVNRQFGIIFALPYDSRQIFIDNSIPFDVEVTE* |
| Ga0153698_140613 | F002707 | GGA | MTQLQALTKCLVLAITAPTDEQSEKANELAQQIAQGLTDLQVEQCKYDALNLIDEVGL* |
| Ga0153698_140638 | F073255 | GGA | MYDKETNTQTSKESVNGHQGQANSVGHADGQLHPVHLRIGYGGQLYVGFVGKRSGQLRDIQDDFTRFFYSYRRHDWIPEWYQTHAK* |
| Ga0153698_140639 | F001538 | GAG | MIDTIKLFPTVQPSGYPDKHDLAQVKLEKQHEMNKVNELAKQKHSQLQDLEFEIYTKKVAQERLRMEIFQNRKLDVYV* |
| Ga0153698_140640 | F000332 | N/A | LGFVVRWLIPLVLTLSLYSIAKDGCHVREFWSIAWTIHNPSERHQQLSMWLTNNVRFCRSQDLAVIWNGLAEWAGTADSAELRAKVIHGYKDALEREKK* |
| Ga0153698_14067 | F017789 | N/A | MQTYTWKYLVCSMAITDLADLEMNGSIPNDWKFTFKKGSTLYDEVGSAWRERSENTVYLCHKNAPESKQRWVHPDTLIDVYKVSP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |