Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1374 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1374 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	19208
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (28.95%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

19208

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (28.95%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017271	Metagenome / Metatranscriptome	241	N
F020651	Metagenome / Metatranscriptome	222	Y
F025648	Metagenome / Metatranscriptome	200	N
F032560	Metagenome / Metatranscriptome	179	Y
F054663	Metagenome	139	N
F054853	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_137413	F025648	GGA	LPNGLISKEDLPIIEAFTGDKLNLISPVTLRENLAYIFTLIGLTRLPDVTELEVIEDYIRTTYPYFTIQEMRIAFKMAVQGKFECNIEHYEKFSPKYISGIMNAYKSKANQVRKNIPPPPEQPVKQLTENEIVEFTKQEWLSGKREDFNRLFNADKVFLILLKQGKITFTNEQIMETIKVVSDDNLYRLNRMHPKDAKEFSKQIKDEDFIELQCKKLALVKYFENL*
Ga0153698_137417	F054663	GGA	MEIKQEHREWLTANISNYESAKNGYIRNLELNELKMYEHIYRSYLDANFIVSVWCGSCKFEMIMKLYKWFEKQ*
Ga0153698_137419	F020651	AGG	MNIAVILLTQNRNDLTKRIIDQNFYNSGYDADCFLIDNGSETMPINLFNFKGCNGSFGKRGIGAGVNTGFRMTKDYDGVCLLANDILLPKNWLSNWVMFAKRVSKTGIIGIHCVEELPPLVDGVHKTHTPFGDNFITRELIDAIGGYNEAYDPYGMQDRDFAERATIAGFTNYYLPDLKSEHIGHDVGNGTEYRAMKDESLHRAQSVWEKYQKIYHIDKNIRCEF*
Ga0153698_137433	F017271	N/A	MITNFEEITKVMTEDEKKLVPIIIKGLSTKTKDNPIKGADIVNAINENKDKYGIKVFNEPRLRKIINFIRSEGILPVMGTLNGYYCTKDRTELESQIESLTQRAEAIMTSANGLKKFL*
Ga0153698_13745	F054853	N/A	MSDEKEPEITEEIEWEEAETTTRSDLISCAYYAINAVDEIDLTLISKIEANKIKKIRRQSLDIIAEVINELHAEIFDVEEDI*
Ga0153698_13749	F032560	N/A	MQETYQDLEDGMQKLLPMERQMLLAKVYHYAWYNEKAYKELITFINHWEKNSEFKAVFFNQDSEESINQI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1374

Overview

Ecosystem & Geography

Associated Families

Sequences