Scaffold Ga0153698_1364

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1364
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19388
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (27.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F034147	Metagenome / Metatranscriptome	175	Y
F059884	Metagenome / Metatranscriptome	133	Y
F088879	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_136424	F005529	N/A	MAKGLPITKTDYSLEIRYRLRDGQWSPWSNKGKGKFESIEIVQRQIRTLASAYQLREKEVRFEWNGKLCDFTGQVTNEVITLK*
Ga0153698_136429	F008073	N/A	IECLNDLFKKFGWMTDERVDYILHAGLRGQYGDFYHVNEKTVNGWINQYYQHHQSQIVMEIQNQNNKDKEPSAEEIEYWIEVGKNIFRENYQHAKETGFCKDIAEWGVNWFNKFQEKGILKPWLYNLEEIEKEVRKELRLTKHWVEESTVGAKSRNKIWKLFILESIKENKNLDKLI*
Ga0153698_13644	F059884	N/A	MLLVGRTKIPYEQLFCLSRKELKALIKGHEIDQKDMIESIRVHAIIGLHPHLKKGANIDPTKIWPLPWDKTIKPLESTPQDFAKAKKLLEIASKLERNGKSKYTS*
Ga0153698_13645	F034147	N/A	MAKYHVAPFKEGEIFFYPNLGALANFEDFTGQGIANAFDGQSIPKIDLIYALLHECHKVACLRKSTNPVGLDELKVWIEGKDVMKLFSDVLADLLLELGIGESLEKKT*
Ga0153698_13647	F088879	AGGA	MREISTDIRIAVINAITPLTLSGVTLPVYDTELPPGINPANYQNSAAYVLITDQNEAETTNNDCTIRQNATFQINIITKFPQGSGGKKLSENISNAIQKKMTLQYLNLPIDLQAINIRKNFSRVQIEQGSSQIAYQKILSYTLDIFFVS*