Scaffold Ga0153698_1354

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1354
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19764
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F001538	Metagenome / Metatranscriptome	674	Y
F001629	Metagenome	660	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_135416	F001629	N/A	MILNQGKLAGGLVDELLELIHKYDDTLYMSTVIGCLELVKQELINENVKSEEE*
Ga0153698_135419	F001538	GAG	MIETIRLFPTVQASGYPDKRDLAQAKLEKQHEMNKTVEVAKQKQTELQDIGFEIYCKKVVQERLRMEIFTNRKLDIYV*
Ga0153698_135420	F000332	N/A	MRWLLLLLLLLGLVGAVAKSGCHVREFYGIGYTVHDPTERHKQMMAWLDQNADHCKSTEYVVIWNNLSEWAGVADSTWLRAKVVHGYKDALEREKK*