Scaffold Ga0153698_1336

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1336
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20174
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F027487	Metagenome / Metatranscriptome	194	N
F073100	Metagenome	120	N
F090571	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_133610	F017989	N/A	MATPALSQPCFVDLTPDQQNFNIYESLKQIAGFDIPAYDQIDIAYYGTTNNIATVQYLADGVPVATLNLFYSVNPPTTNDANLTTVTVTYP*
Ga0153698_133611	F027487	N/A	MACFTSLPYRDKFYPLLITVSAAAGITPITFGCFDAASDASRLYQFYLAFATIGSLTPVSENCFVQTTEDQQLFVLNEAVAAALIVT*
Ga0153698_133613	F025268	N/A	MASDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCSPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDGAWFVPEHTINNEAGYDLCAIRVKIAPADLGKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINAARFNADTAFNASLPAFNEADPATWAKLVRVPRYVKVVLEQGCAYVPNRAYRTADFGISVAMVNKAMVKWTMPSSSGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRLPQSKNLYGSCCEVQTYIVPENNQDCYSCAGVGDIVVPS*
Ga0153698_133619	F021128	N/A	MKGKMKLKNRNLAPVGGFYYKYEIKRDKLTFPAIVYGSTWSSLISNIQKDCRSNGIEIPENLEQLVEDQICQRQPSDRCWYADGIGDRIAQAIHTVAAVTDRVLGTKLEHKARGCSSCNRRRNALNSLS*
Ga0153698_133620	F023326	N/A	MSRIFSGNTGIQKYGIKFPENMDELGIELYCYAISKGEYGRDYCNKHNINLSDFKLLTPYEHFLKAVKLQWPTEVSIVNRGYTNTQLLRTLEELCNNDDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKSAAVQFGKLIDYRHMIVWGGGSNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITARVNLSANNDVVFIGIGNPSAGDNPHTRWAMPKGASNFDTVSPEMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRKKQEVMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFHKIAGFDTAFTVGGDRCVLTIAKLGYIRGTRNRVMWLESQKVIQLSAREAAEFEVGLAKEVVELCRASGVQPTKFGMDVSGDGGRVAQAIIREWLKYDSSGHSIALISSMGKPTERMAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVIYGVGAASELARELCIRRYFIKSKKISVETKDDYKGRTGYSPDLADSFLYCLEMSRRFGLVFIGNDKAVPTNRFWARDEKPTDSFLEDDSYSSDENGDW*
Ga0153698_133624	F073100	N/A	MDNTNENNAVDKDAERMLAAIRQTVLITNMSLAAALNTGFIAQYESDQGICNMALKPNNTAVVATTAATGLTIYQSNFFIKDDAMGEQRHIYKCQNEDDADEIWDKINDRMYQWSRNEIKSVSLE*
Ga0153698_133627	F090571	GAGG	MSTDKAYEKASRYMDAALQIWESQDKERYCIAENYWNQGMKIYNEYFIQINVLTELQDIDSLLP*