Scaffold Ga0153698_1335

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1335
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20194
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (36.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015720	Metagenome / Metatranscriptome	252	Y
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F037116	Metagenome / Metatranscriptome	168	N
F042808	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_13351	F028149	AGGAG	MASGNVISCKQFQSFLVSQEPVYDKEILKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGAWENPTGAACTGTPCDTEENKIGWGFTRNTYSLEKQAWGSDLLCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYDAISNTQPGAFACSAGLPAIAFSWVGTGYSVLRVTNTAAAPITSASLGLLTPDILRSRVTRQYFLGAVQAGKDGYDSLQLHTDKETFRYLSKDNPLLVSSWRFGEFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFVSIAATPGNYRLVLPYKNVVATQGIRSEFNPDYNNAQFQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCSGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVTGCAADPGDSAQDYNSADPVCPRVIQFTAVADDATNYVIGTTGIMCDDNIVTNAGISSATVALLIVALQARWDAEFGAGSGTWSIVSGNLIQVSGTSCTNVTLEFAI*
Ga0153698_133517	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWTKLLTFADPTVLYNGGYYNAAVELAFKEGLFQGCGTYVSDNGDPYIFASIGGKVFQIDINDGFKVNDLTPIASQFFVFTRGRTSNVATYVTGAPHGLSAGMVVRLPEVPGATAPAGFFGDFVVQTVPTLTTFTTFSPGTDAGPFLGPAFFGYQLATNNPSAEHVYFQQAEDWLIIQDVQNQPYLYNGSTLRRATGEEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPAYGRDSVIRFTENTFINEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLNYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVTRAIAYDTEFYLKAASSVNFDNRLLMTIQPQKVNGRGTVHRGVVVLDFDLVSGMGRKLPPAWEGVWTGVDVLQMLTIRIQKQERCFMFGLNQGNIGLFEVTKNGQFDFDGFDDVPIDWTIETRSITFGEPTNKKRLVSAEQWYDQVMGNIEAKVYFKANEGECWQPWAEIKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSE*
Ga0153698_133520	F034904	N/A	MRKTLAQAKNSTIPQAVGLATCDERFLQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAINLCGYNIPIQNQWYEFQTDTRAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVTPQLSADVGKRVLLQGLDPNGIPIRTLDSVSGEYVWGEYVTLPNPSITAYVQTSNRFKQPGLTGAQKPLTQGSLTIIAENDTTGLLTQVAVWGPSEQNPEYRRTYLVGMPEVCGGANSCNTTQDNCCIDNGDGCVPADEACTNTVVETIVRLDFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKIQFRFSGFI*
Ga0153698_13357	F037116	N/A	MEPTNSGSTSPGLSLVAAAGATAASFLPILTDWVRLVTAVVGLLCACYGAYRLFKSK*
Ga0153698_13358	F015720	AGG	MKNTKTTLAGIGAILIAVGGALRAAFDGDASTNIDIASTIAAVTAGIGLIMAKDAEKTPVVPPV*