Scaffold Ga0153698_1332

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1332
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20316
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (28.57%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F016253	Metagenome / Metatranscriptome	248	Y
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_133219	F023575	N/A	MANSKGLALVYGAKGTITLFTPAGVALTTGAISTIESYDATHEADVEQIKNSSGEVVAQISANERISLNVTFIPSAADFAQAKLAAGLPAVNGYATIASSDGVTVGGVSLDGNYVYSGGGSVKFTSSGKAMVTVPVTKYPSLAGNAAVFTL*
Ga0153698_13322	F016253	AGGAG	MKDSIKKIIDGGTGVYSISKQEAGEIHKAAKKVKNYEVSYWTKNRKKKEAK*
Ga0153698_133220	F010835	AGGA	MNAVALRTERALVDWLSAEDWSESPIGTPTCLTSYGHGAFADPDLEDSMPAFPRIVVRASTAVPVHPLDRTCEVDVTATLQLSADDTSESHMLAVVQIFENLLQYLYVDGNIAELNADDTNPSGGYNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI*
Ga0153698_133221	F013879	N/A	MNPTVTVDTSRFDAAWKEYLPKTKRSLAQAVNARTFYLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRNAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNAALISLANQYGLPQENVSMHRGSSAYAYNAKAGFNPSSSVRMNIGLADNQIGTVEAIYARAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT*
Ga0153698_133222	F007260	GAG	MGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGANVDRLLQESGSLLLQENTDRLLLTFGKMMPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK*
Ga0153698_133224	F017997	GAG	VNFIEQIVTALLKWLTSFVQKPPTVEDAKRDPELKKKLLDCIAKSDR*
Ga0153698_13328	F013412	GGAGG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKAYAQRVTFRSFDHEDMDAVNLLVEGTHVMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGHES*