Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1329 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1329 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	20472
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (81.08%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20472

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (81.08%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F003182	Metagenome / Metatranscriptome	502	Y
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y
F075838	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_13291	F075838	N/A	IGLYGQLAQIISTTLHNAADAQDQADFYLTLRAYPQFNFNNTTFELTNPELDDADRDDLIGVFMGMPVQIADLPLNMNSGDYLGFVEGWTFSARYNQISISLILSPISFSLQAMRWNDVPVVEQWNTVNPTLDWINATIVA*
Ga0153698_132910	F000903	N/A	MITRMEEIQCMIAAIDHCKDRNADHSSRIIRNLSWFEYVAQNAESMVSEWVVAKALGYDYKPGITWDKEQADVGDHIEVKWSPNSHSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWIPVAVCKKPRYRNQSQNNWSVPQINLQPIETLMRSNYAHPSI*
Ga0153698_132911	F003182	AGGAG	MHILQFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEEMSDGHL*
Ga0153698_13297	F009883	GGAG	MNEATIVIAMVIAGALWAVMSYSVGFREGQRQGYTRGRAVSRHISQLNEKVDN*
Ga0153698_13298	F012452	AGAAGG	MAGFLENYEGNKERTDRWIATFPNGRLEAHIIEFNADKGFVLVQAKAWRNQEETEPAGIDYAFGYREAYNPNMKRWFCEDTTTSALMRVMALVMGGTEKATKETMEQVKVNDATKPVEHDYWTTKFGDVPSYKTAAEAEQAGIPSLGSSMDEIAKQLGGELVQEAPQCAHGHRVWRTGTSAKTGKDWANFSCVGKKPDQCDPLWYVFTSRGKWEPQV*
Ga0153698_13299	F000403	GGA	MSDYAEIIYPQSMTAKLLCNGEVVEEYKIEQCDKCSQLRRFDKFGYQKGYDHTDNIIWFCGDCR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1329

Overview

Ecosystem & Geography

Associated Families

Sequences