Scaffold Ga0153698_1314

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1314
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20997
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (79.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015860	Metagenome	251	Y
F018705	Metagenome / Metatranscriptome	233	Y
F037636	Metagenome / Metatranscriptome	167	Y
F046898	Metagenome / Metatranscriptome	150	Y
F088805	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_131414	F018705	N/A	MKPKLKPFLMRLHPATRELLDKAAADQQRSVSSLIDQCVREQLQPRYGELQPRLQRFLSGVRQP*
Ga0153698_131418	F046898	AGGAG	MLANNLATGRDMRDRQLDIFEQRDHQFLERCRALAVLVCKQHGQVSINDIRQFIEVPPGVHPSVLGAVFRTKQFKRVGFTEATHPQAHARVVRVYQLKE*
Ga0153698_131428	F037636	AGGCGG	MIKLELSIEDVNYILGTLGELPSKTGAFMLMMRIKEQADPQVPQEEKNE*
Ga0153698_13145	F088805	N/A	MSLSNHQIFMLKHFAIGWRFKLFNDKPGSWSTYWSLRRRGLVTAGSVVTDLGRKVLAKELQLQAKRESKC*
Ga0153698_13147	F015860	GGA	MEQAMHVSYVKLFRDDEGIIRDTQEANGELRNLHHQIALLKDALEREMETVDNLQELLKGVRRIALELNNEILKGQENASTKK*