Scaffold Ga0153698_1298

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1298
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21698
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F010449	Metagenome / Metatranscriptome	303	N
F035221	Metagenome / Metatranscriptome	172	N
F037193	Metagenome / Metatranscriptome	168	Y
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_12981	F010449	N/A	VSEEQVWNMEVRLARMEERQLQLYAMVERSLAFHGDVANRLSALEHLRTKVLAVAGLIGLACSVAWDVLKNRFSN*
Ga0153698_129813	F035221	GAG	MKAIITITLTAMLMASVMADDFDGGVYNSGYAVFSGGKGLAITSNGLIVDNGILKQTPNGCYSSCGDVYYGGNEIVTKSGYLFYGSNGTKVQVGEYYSGTAGSTYVFDDDSE*
Ga0153698_129823	F041081	GAGG	MIMEDVGVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHYFAELVNNVTMSKIEISTATEDIKNPSKDLLEKADDLLSIQATEDFDAGK*
Ga0153698_129824	F003304	N/A	MKQALVTQSFGEDWQKIIDLTRPRMEAYCNRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIASDCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGMIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLSNQIKEDEAKLVELGR*
Ga0153698_129829	F004010	AGGA	MPLGKDVSKNMSELARDNRRQGSERGAGGKPRSREQMIAIALSAAGKSKPRKFRMRSGS*
Ga0153698_129830	F002826	N/A	MQVDAKARLKWARDMLAIAREKLVLERNRATHGRSVDMIQIITMVDAASLVCKEVVGEE*
Ga0153698_129831	F037193	GGTGG	MKSKDELAMQVKKEWDEKGWRWKLSLSAGGFTSEIYCYGTAEDGYFNCVRELVDHAYQMQSV*
Ga0153698_12984	F000635	AGAAG	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGIAQLNLYPRLATSGTIPLRVVEKLKCITRSNYIVDFPPSTDALGDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA*
Ga0153698_12986	F002149	GAGG	MTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGVVKDGEEIAGVALARCLKDGQEPKHYEHTEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYCYMTFMRKAFIGSKL*