Scaffold Ga0153698_1267

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1267
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23219
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009953	Metagenome / Metatranscriptome	310	Y
F034467	Metagenome	174	Y
F046865	Metagenome	150	Y
F074390	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_126710	F074390	AGGA	MELTKVAQAINATQADLAKQSGELFAQSEIDAGQALELFAKSVGTEPTYEAWNSCRVEFINAYVRTKPQAKGNSADQAFKRFRGRLVDAYGLEAPKAQTEAALKKAEERKAKQDTLEARYADTSTRVMKDLLSNEYQAQAKNPTKKSAILKELEKAVALRIKQEAEGQREELKAIRDELIAWIRACNDLDRLTLAHEMMNPDYDVQAETVTD*
Ga0153698_126725	F034467	AGGAG	MEQLKYLSKAVPLRLCTDPKFKYRNASQTDVRRTWRKARLLMLLTKGVAYESRT*
Ga0153698_126733	F046865	GAGG	MILKQLDPVSNKIRNDTLEEVAKEFDGMKNGGDTTASFAVYVRSLKK*
Ga0153698_12675	F009953	AGGGGG	LNDYKLLAHVAKEIEKLKEEHSFHVANGKAAGIEEYRSICGVIRGLNLAENIINDLVQKLEKSDD*