Scaffold Ga0153698_1247

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1247
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24847
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (13.16%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F018511	Metagenome / Metatranscriptome	234	N
F021732	Metagenome / Metatranscriptome	217	Y
F025505	Metagenome / Metatranscriptome	201	N
F031407	Metagenome / Metatranscriptome	182	N
F031483	Metagenome	182	N
F034112	Metagenome / Metatranscriptome	175	N
F073276	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_124728	F031407	N/A	MTDKEKAVIIIDLIEKVTQEIIDKPQHRKRLLQMRSHLEKAVKLTGNGIKREWSRPPSLPIFQHEKATAKPFEPETSGDVLADNSPEPTRKGKKK*
Ga0153698_124729	F034112	AGGA	MVVFNIGNKAVRYEYPETAADITLEQYIYFMKFLLPQHPKAELEAIEYMNERDAVYEKIKPYARKLKVETKNENQATVVSQLTRILDTQEVKDNVRRFLPALISQWETNDDQLGIRLQIMDEVWEAKERYPYMAKVVNYFTGIPLEACYGKVAESVELKYLTFLYTKIVNAINTPTETTYKQLYDFNGRVYTLPDKLMEKSTLLEFTMAAQYDKAIKQIGNGEAEGLLNVMAVLLKPLGEEYSDELFEQNKVDFLQMPLQTSFEVAFFLTKLSEKYTLDLQTSMLQRAMENLN*
Ga0153698_12473	F031483	N/A	MNILKGKVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDEKLMALKKDDVVTIIHDGKSYKVAFDMITANEIPEKAQTPTEGANVQQTSNVAPKNNGKLTPDEITEKATLMTSVYADIFHQLQASGLEAAQAQPAAATIFIQIGKYF*
Ga0153698_124731	F073276	N/A	MSLVELANIFEAATDAVTGLNGFSFGWASDRVRSQIYTEEGENNTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYNEQGDVDTTLQITKWSNLIAFAEKFVLHLSTTKTTNSIPEEVNLTLDSFTSMQRLITVQATFNISIKSEC*
Ga0153698_124736	F018511	N/A	MKVESIWAELATRIPEEYKAQVMATVDRTYRVLSIDPSDMDYLFHIYNNFVNHYEPERRNCPACRTKVVGKMRQIVNYWRDGNQ*
Ga0153698_12474	F014956	GGA	MINIQEFALNAALSVCPAHIVEPIHLKKWWRKKGVGELEKYFWTGKKIKYDDEINWKAISDYKKQLWYDSQNFQINMGHEYSKRQG*
Ga0153698_12476	F021732	N/A	MITKYTCKCTLDKKKGNYVHVVFSSGFGLYNQNKPYSPDDNIEIHGWTFEPEDIDLELYPPITRYNLTPLVAENEIDWVIINN*
Ga0153698_12479	F025505	N/A	MNNLPMIANRVEEKIQDVQLVIDNRDKRIMKIGAKEAIPKITQVLYQLLPIYGIEAKEEHLLELTEFISTYKLISVDEIKLAFEKFAKQELDINDHKLYGKVDLHAIGRILTAYINWRQKIYFAMDSDLQAKKEEEDRLKRLGKVAEEYDNDFDNKLKNFQSPNLDDIPVFWFDICVKRGYIVWGDGEKEKLWEEAKAMALNEKPDSDNLIDRKNHLRKIEEGNIPRAKALAFKLAVWRKVLLRD*