Scaffold Ga0153698_1235

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1235
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25513
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (79.07%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F001731	Metagenome	644	Y
F002433	Metagenome / Metatranscriptome	559	Y
F005452	Metagenome / Metatranscriptome	400	N
F010982	Metagenome	296	N
F047681	Metagenome	149	N
F081328	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_123512	F001731	AGGA	MSVWNPVWRVKINGVDYTNAILSNLTITSGRTNIYEQAQAGYINLQLINLDESLITAEINQSITVELQDSTAAYVPIFGGSIVDVGISITDAGGIAYAQTVTIVALGALARLQKALTNGILPKAFDGTQIYTILKNVLFTQWQSVPAAETWAAFNPATTWATALQNGLGEIDLPGNYELANRASSRIDVYQLVAALATSGLGYIYEDASGLISYADSTHRTVYLAANGYVDLSANDALANSLKIQTRAGDVRNNLTIKYGSLSTNEISATNPASIAVYGNLAQIITTTLFNAGDATSQAAFYLALRAYPQANFNSITYELTNPEISDSDRDALIGIFMGMPVFIADLPLNMNAGSFPGFVEGWTFRAAYNQVSITPLLSPLAYSLNAMRWNDVPVVEQWTTISPTLDWENATIVA*
Ga0153698_123525	F010982	GGAG	MIMVRLSREDEIIAHSAGLARESRYGSNPKFQGNKGNFHNAVVIHSEAVGAEMAVARYFGVADFVPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIISEDDRDTDIAVLVVGESPSYYVMGWIPVGVAKRPRFHSAQGGYWVSQINLQPIETLRKSIHANT*
Ga0153698_123526	F000403	GGA	MSGPVEIINPRTMTCTLMEDGVIIATYKVEQCDKCSRLVKFDDFGYQKGFGNEKIIWFCAECR*
Ga0153698_123529	F002433	N/A	VSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMRELMPNGGNSIKDQVSRIEERLNQLILELALKK*
Ga0153698_12354	F081328	GGA	MGGISFTRNGVTGHITADGEVLNDKVGQPCDSCFEPFNKAHMIRIIDDRLMICQGCYIKHIQR*
Ga0153698_123541	F005452	N/A	MTIEADIRTPLQTTLSTIAANVYNGIPEAMTSPSIVLVPDSPYLESTLINGSTTKVKINMLITGVVGYSSNAAALTNLEDLMIEIISTMPAGYVVGDVSSPNPLEVGAGKFLTADLQVSTYYTD*
Ga0153698_123542	F047681	AGAAGG	MPQIVTAAELRSILGVSVSLYSNAYLEQMIESAELTILPLLTGYQSAVTEVFVENSIAYYGTQRVNYFVPGQDVVITGCGIYDATVTVTDDRIAPMVFTSATGEADSTYTIPIIPSGLACIDGATAGDLYSGVAPIKSAILVVAVEVFQSVTAPGNQIMSDAFQPSPFVLGRSLTSRIVGLLGPFLEVETMCL*