Scaffold Ga0153698_1233

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1233
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25822
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (25.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F037224	Metagenome	168	Y
F072337	Metagenome / Metatranscriptome	121	N
F094950	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_123310	F094950	N/A	MVTILGREIPNRIEELTIEQFEAITDINNNKELDPVDRHLQIFEFLGIPESEFFDFDIADFIDIVKEFNSAQEPMANTEPVGTLELDGYTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTKAEHYTEAHLKLKSKHIRKLKAELCIPYIMFVANKIKKQVEDVPTETVEYVPTETVE*
Ga0153698_123319	F010620	GAG	MRYILPIIALCLLGSCSNAKKAQYHYKKAVKFGLQLVQDSDTIRIISVDSLPVVVNDTIIWEKVIRTKDTIINFKNIYVPKTRWQTRIEYRYKTQLVKQDVLKYKYIYKTEKKQKAKTNWMLFVYGLIAGFVVSFVLRILDKLYNPFK*
Ga0153698_12332	F037224	N/A	MHSDTLHKIQVVQAYIHHKTGKQVRIVFNRPDRVQQHLAMLDHAYLVAMSGFKNNNSNGDNIGKEK*
Ga0153698_123324	F010918	AGG	MKRFKVTYNYFDGGKKRIGIRILEALDRDHAIMLMAMWPKLILKVEQYEKI*
Ga0153698_123325	F072337	AGTAG	MKKYRVWLEDIVEPNGGFWWNCYLGDDGKLYDYIYTDQQADTLEWFIKHDYIIEEL*
Ga0153698_12336	F004366	N/A	MNSLQAITNHIIAFYTAHKQVFKVGSDFKEQLYNFATQDEKYPLVYIVPSGVVPTENTTEFNFDIYCYDIIQKDRANIITILSDTQQILSDLNIYFNDSNDFSFDVVGVPTFTPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI*
Ga0153698_12338	F001883	AGTAG	MGRNANTGEFNVLYPTRRRMATILKRILKNDIVDGEGTLVESIRINAKITGFEKLEIQIVAMYYFIFLNNGAFLWNGGVITPRDYVAQFTSELNAAGITAEIYSQYTEWLTKKYPLVEAIEVLEKNQRIVYTFEALDPPAGFTPGFPLDV*