Scaffold Ga0153698_1232

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1232
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25908
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F014954	Metagenome	258	Y
F033353	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_123220	F004450	GGA	MNWVAAGLIALVMSTAYLLDGPSEHEARVDTAEEKIQKLCGENAAWKLLDDGSVQCYTHRGLKTRKVAL*
Ga0153698_123221	F011669	AGGTGG	MSDDEDYELANWMHLIATCILALFALVGIAGLVGYLWGMT*
Ga0153698_12326	F014954	GGAG	MKTITLGRARYIVRDDRHTFLSDILKLTGKHKPVKSKGPERRLYPADGANMSTAAYVAQYYALNSTRHNFKNLAAPYGDANLVGFYDSLSDRLSVPQGEDSMEVCHED*
Ga0153698_12327	F033353	GGAGG	MRTEFHNPEFQITSEVTQTPDGRWRVLLRDDDSGQLVLGAARLFVAEADALAYAEGLCA*