Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1229 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1229 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26065
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (19.44%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26065

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (19.44%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F004366	Metagenome / Metatranscriptome	441	Y
F016965	Metagenome / Metatranscriptome	243	Y
F035679	Metagenome	171	Y
F061680	Metagenome / Metatranscriptome	131	Y
F092029	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_122919	F035679	N/A	MRLSIIILSLISTIFATSCSAPKRAQWHYKKALKNGLQVVQDSDTIRIATIDSIPVIKNDTIVWEKYIAYRDTVIKYNNIYVPKTRWQTRIEYKERVKTLKIKGETQWKTAKAKQVVKYKILWWPVIVSFILGILLRFLIQKGLLDRIALLFKL*
Ga0153698_122923	F061680	N/A	MQVSIENNRAYFEFDEVHGSCEFKITNITDEDYEVELSEIKATQVIGEVELDYILTDMQLDQLNEEIIWCIQETTLIEDMQNLEDDFDEDAWRYDA*
Ga0153698_122926	F092029	N/A	MKYVKYYRMWIEDKVKPEGGFWCYMGTDEKNFLYQLNFPYEKNFQPETLEQYLQWGYRIQEL*
Ga0153698_12295	F004366	N/A	MNSLQAIINHIELFYNNHLQVKKVGSDFKEQLYNFATKDEKYPIVFVVPVSVIPTENTSEFNFDIYCFDIIQKDRANIITILSDTQQILNDLYVYYMDSTDYAFDVVGVPSFQALNNDLLDYAAGYVMNITLTVNDWTDCAVPL*
Ga0153698_12297	F016965	N/A	MFNHNGIEYTITGPIEVISDTQLHVETDKGIILVDDTMDIYKELING*
Ga0153698_12298	F001883	N/A	MARYANTGEFNVLYPTRRRMANILKRILRNDIVDGEGTLVESIRINAKITGFQKLEIQIVAMYYFIFLNNGAFLWNGGVITPREYVAQFTEELNAAGITAEIYRQYTEWLTKKYPLVQAVEVLEKQQKIVYTFEAVDPPAGFTPGFPLDV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1229

Overview

Ecosystem & Geography

Associated Families

Sequences