Scaffold Ga0153698_1197

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1197
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29156
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (83.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035670	Metagenome	171	Y
F074585	Metagenome	119	Y
F093497	Metagenome	106	N
F098900	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_119721	F074585	AGGAGG	MTYTNQKQIRVAFWEAFPDLPRKRHRYSWNQNDKNAELVYATDTRCAFVDFLDSLSRSGQISESLANRATL*
Ga0153698_119741	F035670	AGGA	MSEPELNIWEKAMGWRKRQMVKAQINEVSEKIRNDTLEEVAKEFDKMKPFGDTAQSFDTYVRMMKR*
Ga0153698_119755	F093497	AGGA	MATKYPNSGILGKAKQPKINPNSPDYTGSIDVDISLIKEMLEDARQEGADSINMKLGAWIKEGQFGKFFSIKVNNYKKPATPQQRNIPADDSDIPF*
Ga0153698_119757	F098900	AGGAG	MEDNRLVPYSVHLKREVYDKLKLAAGQRKASALVRDAITMIVEGDDEFNGGYNKGIRDAISVIGEDELASAIAYNGDTVADLLAEKLSEMIVSQNTKGKSNGKKKA*