Scaffold Ga0153698_1181

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1181
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30333
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (74.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F006502	Metagenome / Metatranscriptome	371	Y
F046894	Metagenome	150	N
F060717	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_118126	F060717	AGG	VKLADEQPDNVCFDCGDKWGSHPIKNGENHRVWIDQCDVCLKLTAVADASEYGYMKEGWDGNKVVS*
Ga0153698_118128	F046894	AGG	MMKSYDSWLESGLDQGSLQDQQEYVWTTYMKQGKPCDPMDLDNFQEYLADATADYKGAEKWENLRQYADRGEWEKFGRAIYFLVHDHIENKLIAEEE*
Ga0153698_118141	F004362	AGGA	MTLDDRLRNWAWYVSGSVIPQPDSTCRSFEKNYIPELGNLYAPEEPHYEPDNRDGELIEEAIKGLPLELRKILKARYVSHPYASQNQLAYHLRISTKRFETDLHNAKKRLQDQLDKKTKSKDYADLLKVSGEKDNREWVIRDIQQRNE*
Ga0153698_118143	F006502	N/A	MENKGMSIMIGLLGKEPKMAEKSKGGLLESDTESCPLSTMDADINKGNMKKAVLTAEYGDRKDGEGKCKACEYYETGEEMSKCGVPKDMGHCEIFDFVCKGERGCMAFEPMGAEEDEMEGEED*