Scaffold Ga0153698_1173

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1173
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30968
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (72.22%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001799	Metagenome / Metatranscriptome	632	Y
F002099	Metagenome / Metatranscriptome	593	Y
F002487	Metagenome / Metatranscriptome	554	Y
F052464	Metagenome	142	N
F053242	Metagenome	141	N
F059761	Metagenome	133	Y
F102704	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_11732	F052464	N/A	VDTQVQPKEIDDWLKQSVALVAGRVRGLGTNQRKVRYFGFEKPHDEVTK*
Ga0153698_117323	F102704	GAG	MNYLELRNAVSGNNPQNVSYEDIVSGIQSQYRPQTQFAPTRSLLDSIGALVPDQPRIAYGSLLQAQPRVLPTPMTAVKNPDAAASVDSGVIKLTNVDTGKITDNSDLSKTLVYNNNFTGGTTGGTNLDTSGVNNGLFGTGVTGTNIANVAGTIAPIAALAGNSDLVKTAIALNLIGSAADIQTEQDVLNLGTKIAMLAAGPAGNVLAAGLGLATDNTPMTVNSLLGLTNPTLGLVNQISGNLTGYTLGDIVNGLLNTDAGTVDQYGLLGAANLAKTADASRRAAGLAYDTMDSNTLRVLAELGDTEAKATLAAMSSGGGTSYNPISDLSTARNNSYFNLFTPVGGGGKANTDFTINRAILAE*
Ga0153698_117324	F001799	AGG	LQNNDKHILAQWAKNLLNDDFFKEVLNNLKNEQISVIINTSAEESDRREDAYRHIKTLELITGHLEGLASETVIKEKKWKIL*
Ga0153698_117339	F002099	N/A	LGNAVRWLAALVLTLALQSTGKDLCSVREFYSIAWGVHDPTERHRQMAEWLTKHQNLCKSTDFIVIWNNMSEWGGTSDSHNLRALVISGYKVALEREKK*
Ga0153698_117344	F000166	GAG	MTPNQDEAELFAKSVKKWQQVLSLGDWRIEKGTKPAKQAMASVEFNESARLAVYRLGDFGAEKITQESLDKTALHELLHIFLHDLMMVATDPKSSDEDIEMQEHRVINLLENLLTKDSNGRT*
Ga0153698_117348	F053242	N/A	MICERKGHFLIGEWKKPNENMATGQQLLLKAFAQVPKFTVLVIVGNTDKEQTEVQDVFQVVLGRCVKIGDGLDFLKDFYVMWYEFANSKG*
Ga0153698_117351	F002487	AGTAGG	MITREEAIKDLSHDDYCCYCTEAKGSKYTCCHENHFVPFEDLYEEDKEALIEEYLSEGK*
Ga0153698_11737	F059761	AGG	MTEFSIFEKAMGWRKRQMVESQLKVVGEARNNTLEEVAKEFDKMKAFGDTSQSFATYVRNMKACPPCYGNCNQGRNCPARK*