Scaffold Ga0153698_1163

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1163
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31750
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (70.21%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F011391	Metagenome / Metatranscriptome	291	Y
F019644	Metagenome	228	N
F020354	Metagenome	224	Y
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N
F048279	Metagenome	148	Y
F068828	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_116315	F011391	N/A	MAKYQIVEGFTVLDKQYPATIDGDEVDHLDSLVASGRIVLVADKSTSKAVPAGDK*
Ga0153698_116325	F020354	GAG	MFAKLRNELFALGFTLGASAITIMTLSGTVQNWALFFTFLSLALHLAGVLTKGEEDGSGHED*
Ga0153698_116326	F003378	GGA	MKIKPNAGAAKFFDLGQRLFSLFLSTALPAITTGAVIGVSVAKSAIMAGAMSVIAVVQKLAQASVDGGLTAEEIREAFGTTGKKKK*
Ga0153698_116328	F021759	AGAAG	MDAGLAVVFAAVVASLGGIVVAILQMRNLTEENRTDHAMVQKRLDTVIDMVGKTSAKLTGHLDWHIKEPSKDQKVKQVATRKKK*
Ga0153698_116329	F006986	N/A	VTAVLVIWHDAHSGSESWINIKDLDTDAAEVKSVGFLLVPADGGKPDHITLYQSRNEDSVDHVLHIPVGMVKSIKLLMELETKD*
Ga0153698_11633	F048279	AGGAG	MIVVLLELLAIVLIAVGVFYIAIPLGLIFTGISLLAFTLAWERSKKVDKQ*
Ga0153698_116330	F005528	N/A	MSIGIAQAVSAPTSPTVAPTPLQPLYIPSSADRLDPIQPTRYRHGDVSWLPALAKQAGWPDQTIKQLSLIILRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDITRNRWAAICRELNICTQDPLLDPLTNLKAGLVLYQLSGFEPWNPCNWKVCKVSTTSMP*
Ga0153698_116334	F025023	AGG	MSDTKLSLYNPNFEGQLYETGTDLQSALRLHHDYDTLRPPQRAIIKRIAMECNEFGHSISFDQLKSHRRYSIGRGLIDLLMSDNCDELLISSICFSIQGVLFKSAGGAIGHLDAIEAEQFAKYCRAIRWDEQDIEYDSDSNIFQFPNTEKVGK*
Ga0153698_116340	F019644	AGAAG	MTDNNEPFTDRIKGYVESQCDMDYICTTYVLVATIENFMTSEQKFFTICPPEQVTSTTIGLLESASAAEKLRIARQLLQDE*
Ga0153698_116342	F068828	AGGAGG	MKQIYINTRFGTTRINYDEHADGDIIIVASPGTTIEAVIYEHIECSGINPESIETFKIIEDVVFEPAWYGEKRRALYSDESPNEKYLRDLMGDDAYENYESQ*