Scaffold Ga0153698_1152

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1152
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 32239
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (7.84%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025744	Metagenome	200	Y
F037723	Metagenome	167	Y
F084245	Metagenome / Metatranscriptome	112	N
F101157	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_115224	F084245	N/A	MNFELITAKYDCRCSLTGKNFSRGDQVYYNYEAKTFLDPTYYENIVSQQKSRGAQSYFERHKKLNKIYPNT*
Ga0153698_115225	F101157	N/A	VGYPNGSRDILNNNKNLKHMAKFEFVTETNPVTQAVIYYTRKDELFMENSLSHNKDKAYDRFINISSGVKTEPIVQVLETRYSITQ*
Ga0153698_115240	F037723	N/A	MKQVYVTNNVGDPLEYDYDLKYEEGKRTCLYSRNSEWTEYLHGQKAGSIKDIDDGFLIKIGDNKIELDYCDMQVLKILLLSDLEDTDYFEIRESITIKKWPKGTGIEESLR*
Ga0153698_115251	F025744	N/A	DILLLDEKNGYKFTKESIKKLTAQVKELGEKEFEFKPIEVLNPKGLENFTFLENWTTGITFVKEEEEEL*