NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1140

Scaffold Ga0153698_1140


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1140 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)33151
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (73.68%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002764Metagenome531Y
F043291Metagenome156N
F083939Metagenome / Metatranscriptome112N
F095171Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0153698_11401F043291AGGAMKNLTYSTEVHSIDYGYLTVEFDYFEADDSVGLSEVYDWFAYTVEAFEDEPAGTEVTYELTAADQASIYAQIKKHHIAMLEDFHA*
Ga0153698_11402F095171GGAGGMLNRTKFPRTFNEAFPNSMENGACIEIHVARLTIADKVARVVSLIALIVIALDCFIWRP*
Ga0153698_11403F083939GGAGMDADYIINSVKQTSETLYREHDADQVERLLYRIQMLEGHIRVLVNHIDNARDEIKTLQTELIAKDSK*
Ga0153698_114055F043291AGGAMKNLTYSTEVHSIDYGYLTVEFDYFEEDQSVGLSETYDWFAYTTEAFEDEPAGTDVTYELTAADQAFIYAQIKKHHVAMLEDFHA*
Ga0153698_114056F095171GGAGGMLNRTKFPRTFNEAFPNSMENGACIEIHVARLTLADKVARVVSLIGFIVLALDLLIWRP*
Ga0153698_114057F083939GGAGMDADYIINSVKQTSETLYRNGNADQVERLLYRIQMLEGHIRVLVNHIDNAKDEIKSLQLDLISKDSN*
Ga0153698_11407F002764GAGGLSPEDEAFEELSRRQGDWGLQGSRKHQIIRYAETNARNEVIEEVAQHIEKCTLAFGKDTIQSFTVYIRKMKK*
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