Scaffold Ga0153698_1133

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1133
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 33559
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (82.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000649	Metagenome / Metatranscriptome	960	Y
F001739	Metagenome	643	Y
F002707	Metagenome	535	Y
F087091	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_113316	F002707	GGA	MTQIEALTQCLVLAITAPTDEQSEKANNLAQQIAQGLTDLQVEQCKYDALNLIDAEGL*
Ga0153698_113325	F087091	AGGAG	MMNFLDSYPTEFFISDVGYLVFKQDCFECGRQTQVLITPEQTKILLNLLPEMVKQQTERWTGIQSPAEE*
Ga0153698_113349	F001739	AGGAG	MATTFTTRITAMYTLQQPDPNYVVNALWEVTGVDGQYTASIGGNTTFNSADQEGAFIPYASLTENIVIGWIPESAITSAQQCVQGQIDSMITPPVSPENTPLPWGQ*
Ga0153698_113357	F000649	GGAGG	MSKDKPHYTPDGKLYKGPTHKAGDKLMTGAKHSPTSKFLTHTPKKKK*