Scaffold Ga0153698_1132

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1132
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 33613
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (75.93%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F017968	Metagenome	237	Y
F029755	Metagenome	187	Y
F051918	Metagenome	143	Y
F065786	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_113219	F000332	N/A	MRWLILLLLLGLVGAVAKNGCHVREFYGIGYITHDPTQRHKEMIAWLSQNAEHCKSTDYVVIWNNLAEWAGSADSTFLRAKVVHGYKDALEREKK*
Ga0153698_113223	F065786	AGGA	MTKDDLVNLLRITGAQESAIDAVCAAYDAGWNDALDDYAKRIVVLPFGKDTIGSFGCFIKDAKK*
Ga0153698_113228	F051918	GGAG	MIDQLKDYFRLPSAKELAAKELEMAQRKLLEALSAQEYAKRMGDYHSDRIKRLTAYLKDEA*
Ga0153698_113230	F029755	GGA	MTMTDYKLHYYFDDVVSYDNGTTLENVKVGYDYYPAEINMPHDHNSAEIYDVFVFNLKGDDISCDLPLSEFQHIMSETKIHHARMLKEQNEI*
Ga0153698_113237	F017968	N/A	MKQTEFLTEPEKGNNLANLSSSERLNLRETMRQTEAVEWIRRFKKKALEEGGGEAQYWWQQTLADIAKKRGQPAADDLRQRMNRIKNETSRKS*