Scaffold Ga0153698_1127

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1127
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 34178
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (79.66%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F044314	Metagenome	154	Y
F066574	Metagenome	126	Y
F102841	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_112716	F044314	N/A	MYDPEAIRARVFADMVRLCRLPAWKDWAWREVQRMDEDDLFAGIKAHVLGEMNATRSQG*
Ga0153698_11272	F017969	GGA	MIQVIFVPILFVCMNGNCEFMQAQNWYKSEQQCRAAVDAQKENLQKMALKGGGMVTLIEGTCITLKGGML*
Ga0153698_112750	F066574	N/A	MRGLVIFLIAAFVYGATVKHECSVSDFVNLMYSTNNPKERADKAWDWLDASGPACNKQQLTLIYANLPTLMGSSDSMKIRARIEQLHERASK*
Ga0153698_11279	F102841	AGG	MNSAEIIKDCEDRANAYSTDRCDRLAYEVGCLRAQVRHLCKEIEFAVEEIGNIEKMLMGERA*