Scaffold Ga0153698_1118

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1118
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 34627
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (77.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F030055	Metagenome	186	Y
F071017	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_111830	F011282	N/A	MKKIKNIVVVTGTYTNREGVEKKRYQTIGSLFEDGENFKIKLDTIPLADGGWTGWANCYDLEEKTNKPEGKYDDDRIPF*
Ga0153698_111835	F005737	AGGA	MFDIEKYTKPTDWSQIVLWIVSAAAIVVVLLDLFIWRP*
Ga0153698_111836	F030055	AGGAG	MKHIATLPAADARIMIDQGLEHLVVEHSDLTAPLDCYFCPVTGNLWHAYLGTTELYNVLSSAVIDSLEREFAPLCV*
Ga0153698_111841	F071017	GGAG	MKDLLQTQSLADLKTAKNLANLSSEQRLLMQETLRMMEAKDWIRRYRKKIREKGKAEALAWWQKTLSDVVKRRGQKAADDLRRRMNEICS*