Scaffold Ga0153698_1115

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1115
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 34787
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (76.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F005738	Metagenome / Metatranscriptome	391	Y
F006740	Metagenome	365	Y
F007742	Metagenome	345	Y
F008303	Metagenome / Metatranscriptome	335	Y
F032264	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_111529	F032264	GGAG	MNYTDYETQRAILIEYLHVMIARCDWHGVADVAMDLRELEAENK*
Ga0153698_111530	F006740	AGGA	MPAFETWSQENLAKFAVEAYAKMQEQQDHIEQLQNDLKDAIKAYRELLK*
Ga0153698_111533	F008303	AGGAG	MIDRLILSAVLGTVGFNGLFPDPPPPLTLKQKAKERSISEMCDRKSKSKTAKDLCKRWKEQQNA*
Ga0153698_111535	F002420	AGG	MTFRETTVKYIKDILRPKTIYEVIHTELQEAYLRKLEAETAAEYADAAIKYNSRRIERLKQRLFEHAEDT*
Ga0153698_111547	F007742	N/A	MLWVLLMTYYKSKAAAQALADELTNQDRDAWRYEVHAAARGFYVAVFDDDGHFLGNL*
Ga0153698_11159	F005738	N/A	MSFGVALRNAVSIGLGGIATLFSGTLDAGAAVDNLLTESGANIVQENGDFILLE*