Scaffold Ga0153698_1109

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1109
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35482
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (80.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044971	Metagenome	153	Y
F074554	Metagenome	119	Y
F102805	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_110917	F102805	GGA	MIEQDPSITLSDALARAAVAEAEVARLNRGIAIEIAAADRKAARKLSILRLIFLGIAALMGFLGALTLVNWYVPGSVDKDGIGTSYFQMSKDILLVMTGILGSAMANVFDAGSRSPSSAGERTAPPTEQPPD*
Ga0153698_110918	F044971	GAG	MASDQRTGSVESLAAKAVVGLPTMWRIVTVIGSLASTVILLLGSFAFNMMREEWKELRAEVKEMRHRLDEMPDGQTLNRLADDVQDLGRRLGRLENQVNSWDE*
Ga0153698_110919	F074554	AGGAGG	MVKFTNSKGKLNWGLVIGGLAGTVVPVIVTAVTGGLGAVTIPMWVALASGASALAAGNVEVKTKVERALDADAAKVSVDTHGE*