Scaffold Ga0153698_1108

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1108
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35499
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (21.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011226	Metagenome / Metatranscriptome	293	Y
F011227	Metagenome / Metatranscriptome	293	Y
F043829	Metagenome	155	Y
F047481	Metagenome / Metatranscriptome	149	Y
F051129	Metagenome	144	N
F052371	Metagenome	142	Y
F091307	Metagenome	107	N
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_110816	F043829	N/A	MNQLPKWGDLNTYERHKLLGELIDSMIYSGEALHHLKVTVEKFRAMGWVRSVIMPDIETES*
Ga0153698_110818	F091307	N/A	MKKQVTTNVRIPAEWLKSSIADIMIMVTATINHTEDMVDVCVREILFPGYHGINIESQYHSNFYELVEQKCMDAYTFKMDSHYDNEYYADYVL*
Ga0153698_110819	F093533	N/A	MYYDRIEMTLEVRGEVRATAFPLRNHESIERQRHQWYYFYGLKTIKGWEIYITQKSMMQNSMPFRIEKSFPYLIKSQEHESTESESTDINCEPTDTSGGLEQVVGKRQG*
Ga0153698_110828	F052371	GAG	LTNSEELDLEKFKLSRTSEPIKNLSSGLVIDELLNGMQKLGVKGDKMPNNADLLIMYKSIMEEYPNIKIGEISLGFDLASKGKLDIDAETYQNFSMLYLHRILRAFARYGMQKLNEIKPVTENNWQPRFITDDEKIETAFDCFKKFRQWDNIVFGVDVFNILHKRGNIIVTASETYEKVLTAMNEKMFEGSRQDKIDVKNKMKDDDYMEHQCYRMAVSEYFTKLINRG*
Ga0153698_110834	F051129	N/A	MTQEDEKFIQDNIYNFECVKVGFMKNLPLHILVGYEQIYRRYLDSGFILTSWCSNCVADMMKRLSNYWDSYQANKSVEQPIQQAPKKKGRPFKNKQ*
Ga0153698_11087	F011226	N/A	MAKQISPVTLWVNGESKEAKYLQVTCINDNYENSATNYWQMFNMNVDAEGVESMGEQVACGNTTINGADYIAWGDQPAMAINAWIYNWVADKLNLVILP*
Ga0153698_11088	F011227	N/A	MDLISLKAQAYDILSNLEYFQKQLQEVNQKIAEELQKEKEENG*
Ga0153698_11089	F047481	N/A	MDSKSIGMCIATILIKVWADIALSEVGVVVAILAGISTIIYNVYRLVKEIKS*