Scaffold Ga0153698_1107

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1107
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35604
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (73.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007742	Metagenome	345	Y
F033355	Metagenome	177	Y
F044456	Metagenome / Metatranscriptome	154	Y
F078383	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_110720	F078383	GGA	MKTKGGARPGSGRKPTPISESRAITLWNEGVTKKEIAKRFGVDYGVIRYFFKKKQMFRT*
Ga0153698_110721	F044456	AGG	MELFSSGLGNAGGDVIETILAVFAVGFLGVAVGVGVICLMVWMALNED*
Ga0153698_110733	F033355	AGG	MITIGKTTYRTHRADIFALHAKCTGKHKPVKSKGAEKRLYPPMGATMSTAEYVAAYEMMNASRCIGPWGWQPLSTTPTVAAGEDAAWVE*
Ga0153698_110734	F007742	GGA	MTYFNTKTAAQALADTLAAQDADAWRYEVHAGPRGFYVAVFDFDHFFLGNL*