Scaffold Ga0153698_1103

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1103
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36063
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (76.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F039032	Metagenome / Metatranscriptome	164	N
F055425	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_110335	F019099	AGGAG	MIVKGKFIKDWDKSQISTGYQRPPQFKIITWDMGRVQGWLLGKQPLARNFIEKVIR*
Ga0153698_110340	F039032	N/A	MVTLAEVDHKIDSHVDVCAVRYEGIEKETRGIHARIKRLEQILISGGGAIIILLLTMILKGH*
Ga0153698_110345	F055425	N/A	MITNDEKLASAVMNAYYREMEIHGYQVNIDNYSAMLLALPSEDWPQDWVAFKGVKVEDLPHSLSDDDVQAISDYQYRDRLRSLVRTEKAEQNKSIRIRDVLKAQIGDNYDALVLAYKAAQP*