Scaffold Ga0153698_1102

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1102
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36074
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (76.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022156	Metagenome / Metatranscriptome	215	Y
F027491	Metagenome / Metatranscriptome	194	N
F034115	Metagenome / Metatranscriptome	175	Y
F065554	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_110223	F022156	AGGA	MANEIEKEIVKEAIKEWLNEKVAQFGWFSLRTLFYVFVAGLGYAYLTTHGWSLPK*
Ga0153698_110231	F065554	GGGGG	MIGTVTIGDTPIDVYGTELPSEPDVGIMGNYVEIEDLEVGGISIYEMVANNPIFEQIQEAINDMVNS*
Ga0153698_110238	F027491	N/A	MIMDDMQELYNEQLQEQERLNIALDKAEDGDMLTLAEIDLIRFHCGLPNKRRVNPVLSAIADDFSNIFGGKQ*
Ga0153698_110246	F034115	AGG	MREFAEVFLDLTRTIKRVHELKLKNDHTEAYLLSCDITDYAQELEDVMQKDANIQ*