Scaffold Ga0153698_1099

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1099
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36320
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (75.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F030356	Metagenome	185	Y
F049577	Metagenome	146	Y
F066604	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_109922	F001299	N/A	MSENNNPEYLDNSDPEKNWDYYRQDHGGMITSHNGLADKLLQNDDLYRSMKGDWTRTAWNKGNNIRVTTGREDGKFYIKREQMNTDEVKLRVKNYRHAAELGIPDPLAPLSDDGKLAFKWMELPSVISIRISDQYFNGIPWTALKNDRTLKAQFYRVVETEYPEYVCYPGGKLPIPVAVAYPTKKGEQKYFKGH*
Ga0153698_109926	F030356	GGA	MLDIKHIPVQDINQNKKQNATFVRMKNQMDVKMASYLRYLGTKNAVNRATDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVITKGLMPNGEVNFEFVPEEEGDSDAARQASRMVSKVVNQMNDPHFIINRWAMDANMHKNGMMMIKPVREKIDRYIETEGTNEQLKAFELQAADSGLTALRQSKRQINVDMAKVMAESKQAFGQEQNDYAESMIDSQVEAMRMPSDEVDMDAFNAEQVDANEAKLNSQEQAVRDAIARNTTYRAKYKLTGWNINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMSIQEAVELYPGIQGDLENFRQFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGELELIELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIGESVIPMQEYNTSAARAEIQLGLLTATPRIGVKPDRLDFEMLQDGESAIFVLDSKFNPATDIYQLPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPSDVFNPEVMAPGNSGIKLQMALSPNQIIQDNTVRNSAEGLKEAIWLIWRTLIQYGDDYGVKKLAAESHPDKKPVFLDYQAWDDMNFCDRKQVHLELALGMMSDENSLNRLQLIRKCQNEVLQLIDGLASSGAASVELIKKMIKPFEDTLYALGVKDCDAYLPSDQELMGLVQAAQKQAQNKQSSPEDKVKLSTANLNDVKAKQIEMEVAGTDAESQLDFMSMAAGDPKVYS*
Ga0153698_109930	F049577	N/A	MGIVMNTEVRDGMIHQAQQERIARDTMIMQKVNAAHREGFKVRFPGQVEHCMRLTAERLQAILTRKPTDLSNPETWTSTADEIAKLSEALWHLTVISQVYPMEPANDEHSK*
Ga0153698_109931	F012328	GGTGG	MYRIEKENEMQNTNDQQVNPWDTSAEAAPEKPSKSKRNKVEEVVVVKPAPPVAANAGDFDMDGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGQEVEAKFVGGDNPYIDRTELIPVEDLKAIPAKDPALPGAEDLQNIFVSNSIPHPDFEARMQDKKVSVYFRKYKTGQISYEIVGPVDQRPHGVKLDKYGRERPEIIKWVDPRTGEQIVVREDGSMTPQGRKLRAMMQTFRVNKSNHWDTWIDREFVSLNDSVASNPWELS*
Ga0153698_109937	F066604	N/A	MENTKEKNSKGHGGTRKGAGRPKGSRDQVSIKNLLEALDKHTGGQDYEELLVQDFLQARNNSDTQLTLKYHNLILNKVMSSLAKIEVTDSKDAIEAKQAAFAEALAKLVGVSPETK*