Scaffold Ga0153698_1097

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1097
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36531
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (6.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002739	Metagenome / Metatranscriptome	533	Y
F014380	Metagenome / Metatranscriptome	263	Y
F017300	Metagenome / Metatranscriptome	241	Y
F045558	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_109725	F045558	N/A	MLPIKRISDNMEGYAFLVIDYSQEHNLLFTCAMDDGEIWTLNNKELRFCKNISLERK*
Ga0153698_109731	F014380	N/A	MAIVNQINKKAKLNRWEIVQYQILTHCYINKISVSEADLNCLTYLAIEGDQELSSFCQKAFSKNIFSSTQSVRNSLRKVEKRNLIVKEGKNKKKIFINPEMRVCSVGNILLDFKFAYVAET*
Ga0153698_10976	F002739	AGCAGG	MAKKTKVTAGGEKHVVYKKESATGLGKGKKGSIMVTHPTSDKGKWDTIDLTQKSKAKTVKQGIASVKKWHKEHPYKK*
Ga0153698_109767	F017300	N/A	MIKTKNKNNMSKVTIVADKNGNVIGISQNNPDYGYMRVEQQAIQINNEGWLRNVKRSALIKGRTEDLLSTGYVEGTTLPGKIVVVESLIPFNTENPDRDLKIAGDTGIICRVDDQPIYRQSFYTSNPDAVDELLTHDNTNEIKEVLAAQKEMSSMITNKQSEPVL*